DOCK version 3.5.54, compiled on 20120216 CPU, Date, and Time: node-5-12.c.bkslab.org 13-Mar-12 14:16:39 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: /raid3/people/mysinger/pxc/dude/original/dud_lig_mr_0001.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1695750 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -0.1500015 52.22200 2.9983521E-03 grid max 38.35000 89.22200 40.50300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24982 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C04199917 1123 13280 23 1 92.3 0.06 E C04199917 1 -5.09 -33.30 7.75 -5.56 -36.20 2 C04199917 1293 9677 23 1 53.6 0.05 E C04199917 1 -3.84 -30.82 7.63 -5.56 -32.60 3 C04199917 995 15619 23 1 58.0 0.08 E C04199917 1 -3.56 -32.34 7.77 -5.58 -33.72 4 C04199917 893 6446 23 1 10.1 0.03 E C04199917 1 -3.71 -30.02 7.70 -5.55 -31.57 5 C03831941 2249 28 32 2 0.01 bump 6 C03831941 8806 6386 32 2 0.11 bump 7 C03831941 1480 9 32 2 0.01 bump 8 C03831941 8869 6389 32 2 0.10 bump 9 C03831941 1451 26 32 2 0.01 bump 10 C03831941 8887 6423 32 2 0.10 bump 11 C03831941 2498 49 32 2 0.01 bump 12 C03831941 8744 6336 32 2 0.10 bump 13 C04199918 839 11171 23 1 54.1 0.06 E C04199918 1 -4.43 -29.81 7.12 -5.79 -32.90 14 C04199918 980 11416 23 1 48.3 0.05 E C04199918 1 -5.05 -29.36 6.97 -5.77 -33.21 15 C04199918 731 13244 23 1 26.0 0.06 E C04199918 1 -3.24 -31.12 7.08 -5.79 -33.07 16 C04199918 1049 10575 23 1 61.9 0.05 E C04199918 1 -4.55 -27.61 6.97 -5.77 -30.96 17 C03814383 823 22634 23 1 189.8 0.12 E C03814383 1 -4.87 -34.96 6.39 -5.82 -39.26 18 C03814383 516 11770 23 1 91.4 0.06 E C03814383 1 -4.24 -36.01 6.39 -5.82 -39.68 19 C03814383 775 16732 23 1 132.9 0.08 E C03814383 1 -3.12 -33.79 6.24 -5.83 -36.49 20 C03814383 713 9286 23 1 43.2 0.05 E C03814383 1 -3.34 -32.74 6.27 -5.83 -35.65 21 C03833954 830 25146 23 3 92.0 0.07 E C03833954 2 -3.50 -30.15 4.12 -4.25 -33.78 22 C03833954 786 28956 23 3 87.8 0.08 E C03833954 2 -3.66 -31.44 4.13 -4.22 -35.19 23 C04646295 6578 4641 34 29160 0.06 bump 24 C04646295 4720 66803 34 5103 0.11 bump 25 C04646295 1025 2089 34 25515 0.01 bump 26 C03833953 959 13528 23 1 25.0 0.07 E C03833953 1 -3.13 -22.58 5.82 -5.67 -25.57 27 C03833953 983 13292 23 1 32.0 0.07 E C03833953 1 -3.05 -24.86 5.80 -5.66 -27.77 28 C03833821 1468 159280 26 54 117.3 0.18 E C03833821 4 -8.49 -36.14 10.70 -1.29 -35.22 29 C03833821 1749 185600 26 54 226.0 0.20 E C03833821 4 -8.24 -38.18 10.76 -1.29 -36.96 30 C03833819 2266 50707 27 18 2.0 0.07 E C03833819 4 -3.96 23.35 8.33 -3.40 24.31 31 C03833819 1641 34545 27 18 40.0 0.05 E C03833819 4 -3.84 63.21 8.56 -3.72 64.21 32 C03833822 1400 165559 26 54 157.4 0.19 E C03833822 4 -7.87 -30.73 9.44 -1.30 -30.46 33 C03833822 1338 159588 26 54 196.5 0.18 E C03833822 4 -7.52 -34.75 9.74 -1.37 -33.89 34 C03833822 1763 205995 26 54 211.7 0.23 E C03833822 4 -7.39 -33.64 9.56 -1.27 -32.73 35 C03833822 2041 219440 26 54 274.8 0.25 E C03833822 4 -6.84 -34.87 9.76 -1.32 -33.27 36 C03833820 1145 5718 28 9 10.0 0.01 E C03833820 3 -6.53 -2.65 9.81 -3.75 -3.12 37 C03833820 2010 77947 28 18 17.2 0.13 E C03833820 4 -7.42 -18.45 9.82 -3.76 -19.81 38 C03833823 1748 178576 24 6 322.3 0.30 E C03833823 2 -7.28 -35.69 9.11 -4.27 -38.12 39 C03833823 1573 169283 24 6 436.0 0.28 E C03833823 2 -6.43 -37.87 9.18 -4.21 -39.34 40 C03833823 1655 134605 24 6 220.6 0.23 E C03833823 2 -5.42 -35.05 8.98 -4.21 -35.69 41 C03833823 1797 141914 24 6 181.7 0.24 E C03833823 2 -6.24 -31.60 9.01 -4.22 -33.06 42 C03833824 1500 171826 26 18 261.2 0.23 E C03833824 3 -6.25 -37.16 14.33 -2.89 -31.97 43 C03833824 1569 121580 26 18 99.5 0.16 E C03833824 3 -5.38 -28.86 14.24 -2.79 -22.79 44 C03833824 1462 126134 26 18 197.0 0.17 E C03833824 3 -4.57 -36.10 14.31 -2.71 -29.07 45 C03833824 1311 105552 26 18 172.3 0.14 E C03833824 3 -4.34 -38.59 14.63 -2.72 -31.01 46 C03833825 5882 2646 29 2 2.0 0.03 E C03833825 2 -1.55 364.35 15.05 -6.66 371.19 47 C03833825 5472 2028 29 2 0.0 0.03 E C03833825 2 -0.87 270.18 14.81 -6.72 277.40 48 C03833825 2518 0 29 1 0.01 bump 49 C03833952 523 15919 23 1 122.4 0.08 E C03833952 1 -4.43 -30.15 5.65 -5.79 -34.72 50 C03833952 594 19533 23 1 130.8 0.10 E C03833952 1 -4.23 -32.25 5.70 -5.77 -36.55 EOF: /raid3/people/mysinger/pxc/dude/original/dud_lig_mr_0001.db.gz end of file encountered total minimization steps = 474501 for debugging, time = 5.900000 solvation corrected scores: (a) 1 C03814383 score: -39.676 nathvy = 23 nconfs = 1 2 C03833823 score: -39.336 nathvy = 24 nconfs = 6 3 C03814383 score: -39.264 nathvy = 23 nconfs = 1 4 C03833823 score: -38.124 nathvy = 24 nconfs = 6 5 C03833821 score: -36.959 nathvy = 26 nconfs = 54 6 C03833952 score: -36.546 nathvy = 23 nconfs = 1 7 C03814383 score: -36.489 nathvy = 23 nconfs = 1 8 C04199917 score: -36.203 nathvy = 23 nconfs = 1 9 C03833823 score: -35.694 nathvy = 24 nconfs = 6 10 C03814383 score: -35.647 nathvy = 23 nconfs = 1 11 C03833821 score: -35.223 nathvy = 26 nconfs = 54 12 C03833954 score: -35.187 nathvy = 23 nconfs = 3 13 C03833952 score: -34.720 nathvy = 23 nconfs = 1 14 C03833822 score: -33.885 nathvy = 26 nconfs = 54 15 C03833954 score: -33.781 nathvy = 23 nconfs = 3 16 C04199917 score: -33.716 nathvy = 23 nconfs = 1 17 C03833822 score: -33.272 nathvy = 26 nconfs = 54 18 C04199918 score: -33.211 nathvy = 23 nconfs = 1 19 C04199918 score: -33.065 nathvy = 23 nconfs = 1 20 C03833823 score: -33.055 nathvy = 24 nconfs = 6 21 C04199918 score: -32.902 nathvy = 23 nconfs = 1 22 C03833822 score: -32.733 nathvy = 26 nconfs = 54 23 C04199917 score: -32.596 nathvy = 23 nconfs = 1 24 C03833824 score: -31.968 nathvy = 26 nconfs = 18 25 C04199917 score: -31.570 nathvy = 23 nconfs = 1 26 C03833824 score: -31.012 nathvy = 26 nconfs = 18 27 C04199918 score: -30.961 nathvy = 23 nconfs = 1 28 C03833822 score: -30.458 nathvy = 26 nconfs = 54 29 C03833824 score: -29.068 nathvy = 26 nconfs = 18 30 C03833953 score: -27.768 nathvy = 23 nconfs = 1 31 C03833953 score: -25.569 nathvy = 23 nconfs = 1 32 C03833824 score: -22.793 nathvy = 26 nconfs = 18 33 C03833820 score: -19.809 nathvy = 28 nconfs = 18 34 C03833820 score: -3.116 nathvy = 28 nconfs = 9 35 C03833819 score: 24.311 nathvy = 27 nconfs = 18 36 C03833819 score: 64.212 nathvy = 27 nconfs = 18 37 C03833825 score: 277.399 nathvy = 29 nconfs = 2 38 C03833825 score: 371.190 nathvy = 29 nconfs = 2 Date and Time: 13-Mar-12 14:16:53 elapsed time (sec): 5.9300