usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 19.3485652173913 48.8607826086957 15.980652173913 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1442 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 352 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 352 Number of spheres polar: 122, nonpolar: 193, out of current total: 352 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.97093 29.34189 38.92710 58.81819 5.99765 25.97614 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 122 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 98 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 55 Spheres center of coords (x y z): 19.29945 48.7848523636364 15.9328083636364 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.65792395910285 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 23