usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): 27.4679166666667 14.305125 20.1744166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1378 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 350 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 350 Number of spheres polar: 99, nonpolar: 202, out of current total: 350 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 17.50015 37.46386 4.31951 24.26028 12.61867 30.03355 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 187 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 105 Spheres center of coords (x y z): 27.423258 14.2801557142857 20.082438952381 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.84991472850881 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 41 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 24