DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-28.c.bkslab.org 31-Jan-12 12:30:02 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_mr_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1682184 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -1.504002 29.80000 -0.8149986 grid max 38.99600 68.30000 36.18500 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.43931 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C02574284 4310 82473 23 1 551.0 0.38 E C02574284 1 -4.52 -31.45 7.13 -5.75 -34.59 2 C02574284 4218 59798 23 1 328.3 0.27 E C02574284 1 -4.25 -30.59 7.01 -5.73 -33.56 3 C02574285 5618 117856 23 1 885.4 0.55 E C02574285 1 -4.99 -34.19 7.59 -5.52 -37.11 4 C02574285 5464 90082 23 1 609.5 0.41 E C02574285 1 -3.04 -31.19 7.42 -5.50 -32.30 5 C03814383 4614 127848 23 1 929.2 0.60 E C03814383 1 -4.54 -34.84 6.18 -5.78 -38.97 6 C03814383 3824 93269 23 1 717.6 0.45 E C03814383 1 -4.03 -36.77 6.15 -5.76 -40.41 7 C03831941 7739 179 32 2 0.02 bump 8 C03831941 18002 12702 32 2 0.17 bump 9 C03831941 5498 93 32 2 0.01 bump 10 C03831941 18221 12873 32 2 0.18 bump 11 C03833819 5827 214335 27 18 206.7 0.30 E C03833819 4 -2.48 13.96 8.12 -3.44 16.16 12 C03833819 5479 180726 27 18 178.0 0.24 E C03833819 4 -2.85 14.54 8.16 -3.74 16.11 13 C03833820 5428 42461 28 9 68.4 0.09 E C03833820 3 -6.69 -8.04 9.98 -3.70 -8.45 14 C03833820 8064 364604 28 18 530.2 0.50 E C03833820 4 -6.64 -21.13 9.93 -3.67 -21.51 15 C03833821 5632 680956 26 54 644.5 0.71 E C03833821 4 -8.59 -37.09 10.54 -1.25 -36.39 16 C03833821 6047 812814 26 54 966.0 0.86 E C03833821 4 -8.36 -39.61 10.62 -1.27 -38.62 17 C03833822 4896 635116 26 54 754.9 0.71 E C03833822 4 -7.21 -30.82 9.36 -1.29 -29.96 18 C03833822 4929 654349 26 54 763.1 0.74 E C03833822 4 -8.06 -36.68 9.51 -1.31 -36.53 19 C03833823 6664 742078 24 6 1698.4 1.21 E C03833823 2 -7.53 -34.92 8.78 -4.17 -37.84 20 C03833823 6710 693783 24 6 1630.5 1.17 E C03833823 2 -6.81 -38.05 8.82 -4.15 -40.20 21 C03833824 5918 665440 26 18 1201.2 0.86 E C03833824 3 -5.90 -36.92 13.69 -2.81 -31.95 22 C03833824 5141 452990 26 18 563.2 0.58 E C03833824 3 -4.55 -28.55 13.59 -2.75 -22.26 23 C03833825 15741 7383 29 2 2.0 0.07 E C03833825 2 -2.72 199.80 14.59 -6.69 205.00 24 C03833825 17639 6861 29 2 18.0 0.06 E C03833825 2 -1.82 261.98 14.52 -6.71 267.97 25 C03833952 2910 65837 23 1 433.3 0.34 E C03833952 1 -2.97 -33.13 5.47 -5.70 -36.34 26 C03833952 3245 86065 23 1 635.0 0.44 E C03833952 1 -3.01 -35.24 5.50 -5.68 -38.44 27 C03833953 4195 73382 23 1 432.2 0.36 E C03833953 1 -2.33 -25.47 5.01 -5.63 -28.42 28 C03833953 4666 76063 23 1 472.5 0.40 E C03833953 1 -2.70 -27.05 5.01 -5.62 -30.36 29 C03833954 3494 134590 23 3 381.8 0.35 E C03833954 2 -3.17 -32.12 3.82 -4.03 -35.51 30 C03833954 3261 124870 23 3 384.2 0.36 E C03833954 2 -4.19 -33.20 3.84 -4.00 -37.56 31 C04646295 16092 14539 34 56862 0.17 bump 32 C04646295 7390 103817 34 6804 0.16 bump 33 C04646295 2970 6261 34 34020 0.03 bump EOF: ../database_link/dud_mr_lig_01.db.gz end of file encountered total minimization steps = 1458347 for debugging, time = 14.44000 solvation corrected scores: (a) 1 C03814383 score: -40.405 nathvy = 23 nconfs = 1 2 C03833823 score: -40.204 nathvy = 24 nconfs = 6 3 C03814383 score: -38.969 nathvy = 23 nconfs = 1 4 C03833821 score: -38.622 nathvy = 26 nconfs = 54 5 C03833952 score: -38.442 nathvy = 23 nconfs = 1 6 C03833823 score: -37.841 nathvy = 24 nconfs = 6 7 C03833954 score: -37.556 nathvy = 23 nconfs = 3 8 C02574285 score: -37.113 nathvy = 23 nconfs = 1 9 C03833822 score: -36.532 nathvy = 26 nconfs = 54 10 C03833821 score: -36.390 nathvy = 26 nconfs = 54 11 C03833952 score: -36.336 nathvy = 23 nconfs = 1 12 C03833954 score: -35.510 nathvy = 23 nconfs = 3 13 C02574284 score: -34.592 nathvy = 23 nconfs = 1 14 C02574284 score: -33.563 nathvy = 23 nconfs = 1 15 C02574285 score: -32.304 nathvy = 23 nconfs = 1 16 C03833824 score: -31.952 nathvy = 26 nconfs = 18 17 C03833953 score: -30.365 nathvy = 23 nconfs = 1 18 C03833822 score: -29.959 nathvy = 26 nconfs = 54 19 C03833953 score: -28.418 nathvy = 23 nconfs = 1 20 C03833824 score: -22.259 nathvy = 26 nconfs = 18 21 C03833820 score: -21.509 nathvy = 28 nconfs = 18 22 C03833820 score: -8.452 nathvy = 28 nconfs = 9 23 C03833819 score: 16.112 nathvy = 27 nconfs = 18 24 C03833819 score: 16.159 nathvy = 27 nconfs = 18 25 C03833825 score: 204.995 nathvy = 29 nconfs = 2 26 C03833825 score: 267.972 nathvy = 29 nconfs = 2 Date and Time: 31-Jan-12 12:30:18 elapsed time (sec): 14.4600