usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 19.4254615384615 49.3074230769231 15.9300384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1533 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 366 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 366 Number of spheres polar: 146, nonpolar: 183, out of current total: 366 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.61852 29.26670 39.33660 59.28332 5.95074 25.90632 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 198 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 162 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 103 Spheres center of coords (x y z): 19.6074477669903 48.9139267961165 15.827045631068 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.7746740033683 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 40 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 26