usefragsph not on There are 24 ligand heavy atoms Ligand center of coords (x y z): -18.9839583333333 54.348125 -1.33379166666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1295 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 497 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 491 Number of spheres polar: 174, nonpolar: 276, out of current total: 491 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -28.95540 -8.99704 44.38036 64.34333 -11.30289 8.65147 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 154 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 132 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 63 Spheres center of coords (x y z): -19.2837484126984 54.063893015873 -1.27967634920635 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.81450161168492 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 24