DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-08.c.bkslab.org 31-Jan-12 18:06:47 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_mr_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1741208 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -36.70400 40.37400 -15.10100 grid max 1.296000 78.87400 24.89900 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 40 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.61294 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C02574284 2978 35570 23 1 200.4 0.17 E C02574284 1 -4.00 -31.44 6.88 -5.40 -33.96 2 C02574284 2768 38091 23 1 233.7 0.18 E C02574284 1 -4.10 -22.93 6.78 -5.26 -25.51 3 C02574285 3904 63805 23 1 397.3 0.28 E C02574285 1 -4.44 -30.74 7.45 -5.21 -32.94 4 C02574285 3744 49265 23 1 310.0 0.21 E C02574285 1 -1.83 -27.16 7.09 -5.20 -27.09 5 C03814383 3288 64439 23 1 420.0 0.29 E C03814383 1 -5.38 -29.04 5.89 -5.49 -34.02 6 C03814383 2500 42926 23 1 189.9 0.22 E C03814383 1 -4.68 -30.72 5.89 -5.46 -34.97 7 C03831941 7031 156 32 2 0.02 bump 8 C03831941 13947 8942 32 2 0.15 bump 9 C03831941 5055 103 32 2 0.02 bump 10 C03831941 14007 8941 32 2 0.15 bump 11 C03833819 4626 119871 27 18 174.0 0.18 E C03833819 4 -6.14 -10.24 8.10 -3.40 -11.67 12 C03833819 4362 119403 27 18 126.0 0.17 E C03833819 4 -5.80 -0.99 8.34 -3.12 -1.55 13 C03833820 3929 25194 28 9 12.2 0.06 E C03833820 3 -6.30 -17.82 9.55 -3.43 -17.99 14 C03833820 5001 99085 28 18 118.8 0.15 E C03833820 4 -7.30 -22.68 9.62 -3.44 -23.80 15 C03833821 4467 338467 26 54 334.2 0.38 E C03833821 4 -7.27 -30.41 10.09 -1.15 -28.73 16 C03833821 4449 302919 26 54 82.0 0.36 E C03833821 4 -6.77 -32.62 10.25 -1.13 -30.26 17 C03833822 4012 285278 26 54 326.8 0.33 E C03833822 4 -2.84 -27.61 8.74 -1.43 -23.13 18 C03833822 4234 315018 26 54 291.5 0.36 E C03833822 4 -6.93 -30.68 9.01 -1.31 -29.92 19 C03833823 4799 329476 24 6 584.8 0.57 E C03833823 2 -6.23 -31.08 8.32 -3.96 -32.95 20 C03833823 4662 277941 24 6 543.1 0.48 E C03833823 2 -5.51 -32.37 8.37 -3.89 -33.40 21 C03833824 4098 269772 26 18 415.1 0.36 E C03833824 3 -4.52 -33.39 13.13 -2.57 -27.35 22 C03833824 3724 246992 26 18 202.5 0.31 E C03833824 3 -3.85 -24.86 13.34 -2.42 -17.79 23 C03833825 15084 16794 29 2 16.6 0.09 E C03833825 2 -0.99 -2.24 14.05 -6.29 4.54 24 C03833825 14991 39362 29 2 42.6 0.16 E C03833825 2 0.98 -18.42 13.85 -6.29 -9.88 25 C03833952 2339 49980 23 1 297.4 0.25 E C03833952 1 -4.84 -26.68 5.23 -5.38 -31.67 26 C03833952 2515 55282 23 1 370.0 0.27 E C03833952 1 -4.24 -30.47 5.32 -5.35 -34.75 27 C03833953 3837 41285 23 1 117.6 0.21 E C03833953 1 -3.82 -9.68 4.75 -5.39 -14.14 28 C03833953 4147 35120 23 1 63.1 0.17 E C03833953 1 -3.81 -7.84 4.78 -5.41 -12.28 29 C03833954 3081 119142 23 3 294.2 0.31 E C03833954 2 -5.28 -25.31 3.54 -3.68 -30.74 30 C03833954 2536 85476 23 3 228.9 0.24 E C03833954 2 -4.98 -27.88 3.64 -3.67 -32.90 31 C04646295 11879 30734 34 56862 2.0 0.10 E C04646295 4 -2.27 73.48 9.17 2.14 82.52 32 C04646295 4750 66328 34 6804 0.10 bump 33 C04646295 1754 3535 34 34020 0.02 bump EOF: ../database_link/dud_mr_lig_01.db.gz end of file encountered total minimization steps = 741801 for debugging, time = 8.100000 solvation corrected scores: (a) 1 C03814383 score: -34.970 nathvy = 23 nconfs = 1 2 C03833952 score: -34.750 nathvy = 23 nconfs = 1 3 C03814383 score: -34.022 nathvy = 23 nconfs = 1 4 C02574284 score: -33.964 nathvy = 23 nconfs = 1 5 C03833823 score: -33.400 nathvy = 24 nconfs = 6 6 C03833823 score: -32.947 nathvy = 24 nconfs = 6 7 C02574285 score: -32.935 nathvy = 23 nconfs = 1 8 C03833954 score: -32.896 nathvy = 23 nconfs = 3 9 C03833952 score: -31.670 nathvy = 23 nconfs = 1 10 C03833954 score: -30.736 nathvy = 23 nconfs = 3 11 C03833821 score: -30.264 nathvy = 26 nconfs = 54 12 C03833822 score: -29.915 nathvy = 26 nconfs = 54 13 C03833821 score: -28.735 nathvy = 26 nconfs = 54 14 C03833824 score: -27.350 nathvy = 26 nconfs = 18 15 C02574285 score: -27.091 nathvy = 23 nconfs = 1 16 C02574284 score: -25.514 nathvy = 23 nconfs = 1 17 C03833820 score: -23.801 nathvy = 28 nconfs = 18 18 C03833822 score: -23.129 nathvy = 26 nconfs = 54 19 C03833820 score: -17.993 nathvy = 28 nconfs = 9 20 C03833824 score: -17.789 nathvy = 26 nconfs = 18 21 C03833953 score: -14.135 nathvy = 23 nconfs = 1 22 C03833953 score: -12.283 nathvy = 23 nconfs = 1 23 C03833819 score: -11.675 nathvy = 27 nconfs = 18 24 C03833825 score: -9.880 nathvy = 29 nconfs = 2 25 C03833819 score: -1.554 nathvy = 27 nconfs = 18 26 C03833825 score: 4.535 nathvy = 29 nconfs = 2 27 C04646295 score: 82.524 nathvy = 34 nconfs = 56862 Date and Time: 31-Jan-12 18:06:57 elapsed time (sec): 8.1200