DOCK version 3.5.54, compiled on 20110906 CPU, Date, and Time: node-5-01.c.bkslab.org 1-Feb-12 00:44:45 Solvation type: context-dependent ligand desolvation Internal Distance Clashes will be checked Receptor spheres: ../../sph/match2.sph Receptor cluster number(s): 1 Desolvation grid: ../../grids/solvmap_sev :dislim = 1.5000 maxnodes = 4 ratiom = 0.0000 minnodes = 3 :lbinsz = 0.4000 lovlap = 0.1000 sbinsz = 0.4000 sovlap = 0.1000 Input ligand: ../database_link/dud_mr_lig_01.db.gz DelPhi grid: ../../grids/rec+sph.phi vdW parms: ../../grids/vdw.parms.amb.mindock chemgrid prefix: ../../grids/chem resolution = 0.3300000 number of points = 1680875 a maximum of 1 bad contacts will be allowed for each orientation random seed = 777 natmin = 5 natmax = 100 nsav = 50000 300000 molecules may be searched in this run hydrogens always written out zooming will not be done trilinear interpolation is always done Orientation minimization: best conformation Simplex parameters: Max energy to minimize: 0.100E+16 Max step-size for translation (A): 0.20 Max step-size for euler angles: 5.00 Min energy change for restart (kcal/mol): 1.00 Energy convergence tolerance (kcal/mol): 0.10 Max number of iterations: 200 database version: 5.2 7 colors used in ligand database file 12 colors used in receptor sphere file ligand color positive 1 merged number = 1 ligand color negative 2 merged number = 2 ligand color acceptor 3 merged number = 3 ligand color donor 4 merged number = 4 ligand color ester_o 5 merged number = 5 ligand color amide_o 6 merged number = 6 ligand color neutral 7 merged number = 7 receptor color positive 1 merged number = 1 receptor color negative 2 merged number = 2 receptor color acceptor 3 merged number = 3 receptor color donor 4 merged number = 4 receptor color ester_o 5 merged number = 5 receptor color amide_o 6 merged number = 6 receptor color neutral 7 merged number = 7 receptor color not_neutral 8 merged number = 8 receptor color positive_or_donor 9 merged number = 9 receptor color negative_or_acceptor 10 merged number = 10 receptor color neutral_or_acceptor_or_donor 11 merged number = 11 receptor color donacc 12 merged number = 12 12 colors in merged ligand-sphere color table this is a run with labeled color matching: match positive negative match positive negative_or_acceptor match positive not_neutral match negative positive match negative positive_or_donor match negative not_neutral match donor acceptor match donor donacc match donor negative_or_acceptor match donor neutral_or_acceptor_or_donor match donor not_neutral match acceptor donor match acceptor donacc match acceptor positive_or_donor match acceptor neutral_or_acceptor_or_donor match acceptor not_neutral match neutral neutral match neutral neutral_or_acceptor_or_donor match ester_o donor match ester_o donacc match ester_o positive_or_donor match ester_o not_neutral match amide_o donor match amide_o donacc match amide_o positive_or_donor match amide_o not_neutral 26 chemical matches specified grid min -0.1500015 52.40800 2.9983521E-03 grid max 38.35000 88.90800 40.50300 using cluster number: 1 output file: test.eel1.gz Receptor spheres: 45 0 0 0 0 0 43 non-zero colors in receptor sphere cluster cluster 1 with 45 spheres 9001 9002 9003 9004 9005 9006 9007 9008 9009 9010 9011 9012 9013 9014 9015 9016 9017 9018 9019 9020 9021 9022 9023 9024 9025 9026 9027 9028 9029 9030 9031 9032 9033 9034 9035 9036 9037 9038 9039 9040 9041 9042 9043 9044 9045 maximum receptor sphere-sphere distance 12.24982 mol# id_num matched nscored nhvy nconfs part.fcn Time E id_num nbr elect + vdW + polsol + apolsol = Total 1 C02574284 813 8861 23 1 28.0 0.04 E C02574284 1 -2.86 -29.61 7.10 -5.83 -31.20 2 C02574284 1054 8851 23 1 28.0 0.04 E C02574284 1 -5.64 -29.21 6.97 -5.80 -33.67 3 C02574285 1209 15309 23 1 90.9 0.08 E C02574285 1 -3.27 -33.14 7.68 -5.60 -34.33 4 C02574285 1383 7324 23 1 30.1 0.04 E C02574285 1 -4.88 -30.85 7.43 -5.61 -33.90 5 C03814383 976 27457 23 1 179.1 0.13 E C03814383 1 -3.76 -34.28 6.20 -5.86 -37.70 6 C03814383 624 16711 23 1 103.4 0.08 E C03814383 1 -2.87 -35.17 6.21 -5.85 -37.68 7 C03831941 2484 17 32 2 0.01 bump 8 C03831941 9432 6577 32 2 0.11 bump 9 C03831941 1576 17 32 2 0.00 bump 10 C03831941 9534 6608 32 2 0.11 bump 11 C03833819 2152 39800 27 18 6.0 0.06 E C03833819 4 -4.19 37.51 8.23 -3.40 38.15 12 C03833819 1630 19027 27 18 8.0 0.03 E C03833819 4 -4.30 83.32 8.31 -3.26 84.07 13 C03833820 1272 5976 28 9 6.0 0.02 E C03833820 3 -6.60 15.50 10.00 -3.80 15.09 14 C03833820 1978 81994 28 18 54.6 0.12 E C03833820 4 -7.16 -9.15 9.97 -3.82 -10.17 15 C03833821 1521 127941 26 54 106.0 0.15 E C03833821 4 -9.68 -33.32 10.78 -1.19 -33.41 16 C03833821 1688 177238 26 54 182.3 0.19 E C03833821 4 -9.61 -36.41 10.81 -1.22 -36.43 17 C03833822 1570 148614 26 54 103.0 0.16 E C03833822 4 -8.87 -27.29 9.52 -1.17 -27.80 18 C03833822 1536 138010 26 54 158.4 0.15 E C03833822 4 -8.17 -31.10 9.74 -1.25 -30.78 19 C03833823 1873 172896 24 6 231.7 0.28 E C03833823 2 -6.48 -34.18 8.95 -4.21 -35.91 20 C03833823 1730 177801 24 6 383.2 0.30 E C03833823 2 -6.06 -36.60 9.00 -4.18 -37.84 21 C03833824 1626 166176 26 18 120.5 0.22 E C03833824 3 -4.47 -36.04 14.09 -2.83 -29.25 22 C03833824 1643 99106 26 18 58.4 0.13 E C03833824 3 -5.13 -24.37 13.86 -2.73 -18.37 23 C03833825 5879 2660 29 2 4.0 0.03 E C03833825 2 -2.50 146.77 14.74 -6.73 152.28 24 C03833825 6566 724 29 2 0.0 0.02 E C03833825 2 -1.40 473.41 14.42 -6.96 479.47 25 C03833952 783 14573 23 1 99.2 0.07 E C03833952 1 -3.35 -29.09 5.47 -5.79 -32.76 26 C03833952 696 19651 23 1 126.5 0.10 E C03833952 1 -2.40 -32.49 5.54 -5.77 -35.12 27 C03833953 1197 11118 23 1 26.5 0.06 E C03833953 1 -2.30 -21.79 5.10 -5.71 -24.70 28 C03833953 1133 8752 23 1 52.0 0.04 E C03833953 1 -1.69 -23.76 5.09 -5.71 -26.08 29 C03833954 817 29766 23 3 108.0 0.08 E C03833954 2 -5.29 -27.19 3.85 -4.13 -32.78 30 C03833954 678 30714 23 3 96.2 0.09 E C03833954 2 -4.06 -30.66 3.88 -4.12 -34.97 31 C04646295 8033 5874 34 56862 0.07 bump 32 C04646295 5065 83863 34 6804 0.12 bump 33 C04646295 1208 2244 34 34020 0.01 bump EOF: ../database_link/dud_mr_lig_01.db.gz end of file encountered total minimization steps = 292841 for debugging, time = 3.800000 solvation corrected scores: (a) 1 C03833823 score: -37.836 nathvy = 24 nconfs = 6 2 C03814383 score: -37.696 nathvy = 23 nconfs = 1 3 C03814383 score: -37.680 nathvy = 23 nconfs = 1 4 C03833821 score: -36.431 nathvy = 26 nconfs = 54 5 C03833823 score: -35.909 nathvy = 24 nconfs = 6 6 C03833952 score: -35.116 nathvy = 23 nconfs = 1 7 C03833954 score: -34.966 nathvy = 23 nconfs = 3 8 C02574285 score: -34.334 nathvy = 23 nconfs = 1 9 C02574285 score: -33.902 nathvy = 23 nconfs = 1 10 C02574284 score: -33.673 nathvy = 23 nconfs = 1 11 C03833821 score: -33.412 nathvy = 26 nconfs = 54 12 C03833954 score: -32.775 nathvy = 23 nconfs = 3 13 C03833952 score: -32.763 nathvy = 23 nconfs = 1 14 C02574284 score: -31.203 nathvy = 23 nconfs = 1 15 C03833822 score: -30.778 nathvy = 26 nconfs = 54 16 C03833824 score: -29.248 nathvy = 26 nconfs = 18 17 C03833822 score: -27.801 nathvy = 26 nconfs = 54 18 C03833953 score: -26.079 nathvy = 23 nconfs = 1 19 C03833953 score: -24.697 nathvy = 23 nconfs = 1 20 C03833824 score: -18.371 nathvy = 26 nconfs = 18 21 C03833820 score: -10.166 nathvy = 28 nconfs = 18 22 C03833820 score: 15.090 nathvy = 28 nconfs = 9 23 C03833819 score: 38.154 nathvy = 27 nconfs = 18 24 C03833819 score: 84.072 nathvy = 27 nconfs = 18 25 C03833825 score: 152.285 nathvy = 29 nconfs = 2 26 C03833825 score: 479.466 nathvy = 29 nconfs = 2 Date and Time: 1-Feb-12 00:44:51 elapsed time (sec): 3.8200