usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 19.4254615384615 49.3074230769231 15.9300384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1456 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 330 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 330 Number of spheres polar: 101, nonpolar: 194, out of current total: 330 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.73322 29.28560 39.32993 59.28856 5.93271 25.92570 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 116 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 98 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 59 Spheres center of coords (x y z): 19.6483789830509 49.0547498305085 15.7908815254237 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.64533461661762 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 26