usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 19.4254615384615 49.3074230769231 15.9300384615385 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1456 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 330 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 330 Number of spheres polar: 101, nonpolar: 194, out of current total: 330 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.73322 29.28560 39.32993 59.28856 5.93271 25.92570 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 183 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 151 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 100 Spheres center of coords (x y z): 19.5331004 49.1246742 16.0766726 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 1.74008877946347 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 10 Final number of spheres that are from crystallographic ligand: 26