usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 16.5345142857143 10.6591714285714 138.109514857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1242 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 733 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 731 Number of spheres polar: 243, nonpolar: 398, out of current total: 731 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 6.53948 26.50038 0.76003 20.62428 128.13707 147.37700 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 249 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 192 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 152 Spheres center of coords (x y z): 14.6605492105263 9.37568217105264 140.040957960526 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.35288571897534 Final number of output spheres is: 45 Number of polar spheres: 9 Number of nonpolar spheres: 34 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 35