usefragsph not on There are 29 ligand heavy atoms Ligand center of coords (x y z): -0.382172413793103 7.23237931034483 54.4874827586207 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2048 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1008 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1008 Number of spheres polar: 260, nonpolar: 597, out of current total: 1008 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.31316 9.60129 -2.76204 17.20868 44.49153 64.48730 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 329 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 274 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 231 Spheres center of coords (x y z): 4.12891004329004 7.43423398268398 53.317492077922 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.44442600076385 Final number of output spheres is: 45 Number of polar spheres: 19 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 29