usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): 63.7477368421053 14.0745526315789 115.343868421053 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1515 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 752 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746 Number of spheres polar: 219, nonpolar: 417, out of current total: 746 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 53.83930 73.74080 4.26387 24.03524 105.53353 125.31202 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 403 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 356 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 278 Spheres center of coords (x y z): 61.4710535971223 14.3660897841727 114.719232517986 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.34184352737662 Final number of output spheres is: 60 Number of polar spheres: 12 Number of nonpolar spheres: 44 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 38