usefragsph not on
There are 28 ligand heavy atoms
Ligand center of coords (x y z): -0.540392857142857 -23.3503571428571 28.409
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1685
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 791
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788
Number of spheres polar: 198, nonpolar: 419, out of current total: 788
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -10.42845 9.45862 -33.29121 -13.35092 18.43592 38.35354
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 441
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 372
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 324
Spheres center of coords (x y z): -1.04071410493827 -21.3765233641975 26.6162170987654
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.30821983519171
Final number of output spheres is: 60
Number of polar spheres: 12
Number of nonpolar spheres: 40
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 28