usefragsph not on
There are 46 ligand heavy atoms
Ligand center of coords (x y z): 0.205934782608696 4.04089130434783 28.9682826086957
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2050
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 797
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 797
Number of spheres polar: 292, nonpolar: 415, out of current total: 797
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.43400 10.18990 -5.95234 14.03520 20.53210 38.81007
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 392
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 336
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 293
Spheres center of coords (x y z): -0.381456075085324 1.66140593856655 29.5748874744027
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.15009366111409
Final number of output spheres is: 60
Number of polar spheres: 16
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 46