Distance from surface specified: 1.80 There are 46 ligand heavy atoms Ligand center of coords (x y z): 0.205934782608696 4.04089130434783 28.9682826086957 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 20268 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (14 angstroms): 13591 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<2 angstroms): 13209 Number of spheres polar: 7669, nonpolar: 4469, out of current total: 13209 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -13.79280 14.20180 -9.93040 18.02920 14.98700 42.96560 Number of spheres after removing spheres too close to each other (approximately <1.4 angstroms): 1671 Number of spheres after second pass removing spheres absolutely <0.9 from each other: 858 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 842 Spheres center of coords (x y z): -2.25141520190024 4.23579073634205 29.2269092636579 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 11.4194366179025 Final number of output spheres is: 200 Number of polar spheres: 106 Number of nonpolar spheres: 76 Number of spheres that are near neither polar nor nonpolar receptor atoms: 18 Final number of spheres that are from crystallographic ligand: 46