usefragsph not on
There are 11 ligand heavy atoms
Ligand center of coords (x y z): 1.05309090909091 -12.9627272727273 12.7091818181818
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 393
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 269
WARNING: removing a crystallographic sphere that is distance 1.04580447503345 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 268
Number of spheres polar: 90, nonpolar: 121, out of current total: 268
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -8.82989 4.15540 -21.94175 -4.50400 2.71189 15.74600
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 153
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 133
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 115
Spheres center of coords (x y z): -1.99507826086957 -10.0077915652174 8.88419573913043
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 7.54929756952785
Final number of output spheres is: 60
Number of polar spheres: 33
Number of nonpolar spheres: 14
Number of spheres that are near neither polar nor nonpolar receptor atoms: 13
Final number of spheres that are from crystallographic ligand: 10