usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -13.5759259259259 13.9901111111111 40.5867777777778 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1368 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 774 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 774 Number of spheres polar: 217, nonpolar: 303, out of current total: 774 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -23.57223 -3.58293 4.03145 23.87436 30.62382 50.47908 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 233 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 202 Spheres center of coords (x y z): -11.5293153960396 16.5076426237624 41.9426317326732 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.76678605223457 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 23 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 27