usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 7.95965625 -3.7139375 44.55709375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1510 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 777 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 773 Number of spheres polar: 177, nonpolar: 387, out of current total: 773 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.03639 17.95860 -13.71112 6.00472 34.59344 54.55304 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 438 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 392 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 362 Spheres center of coords (x y z): 8.45934665745857 -5.91750110497237 41.808677679558 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.04076378704026 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32