Enabling DOCK Developer Scripts incl Database Preparation
Intel/Linux
inactives
we got past inactivesDB.ism
actives
we got past actives.ism
node-6-15.c.bkslab.org
du2 starts
1 molecule processed, 0 errors

convert.py (MDL SDF -> Isomeric SMILES):
	mols in: 2	mols out: 2

Total: 2 mols processed.
mol2nam v1.9  Structure to Name Conversion
OpenEye Scientific Software, February 2009


convert.py (Tripos MOL2 -> Isomeric SMILES):
	mols in: 1	mols out: 1

Total: 1 mols processed.
cat: test.ism: No such file or directory
Exception in thread "main" java.lang.NullPointerException
	at molinspiration.util.MolReader.e(Unknown Source)
	at molinspiration.util.MolReader.<init>(Unknown Source)
	at molinspiration.util.MolReader.<init>(Unknown Source)
	at molinspiration.mdk.mib.a(Unknown Source)
	at molinspiration.mdk.mib.main(Unknown Source)
Exception in thread "main" java.lang.NullPointerException
	at molinspiration.util.MolReader.e(Unknown Source)
	at molinspiration.util.MolReader.<init>(Unknown Source)
	at molinspiration.util.MolReader.<init>(Unknown Source)
	at molinspiration.mdk.mib.a(Unknown Source)
	at molinspiration.mdk.mib.main(Unknown Source)
script failed (code 1): 
Use of uninitialized value in concatenation (.) or string at /raid5/people/mysinger/xyz/dockenv/devtools/load_databaseH4.pl line 185.
first try already in
then inzinc
count is 0
nothing to compress
count is 0
bzcat: Can't open input file 44: No such file or directory.
bzcat: Can't open input file 42: No such file or directory.
bzcat: Can't open input file 44: No such file or directory.
bzcat: Can't open input file 44: No such file or directory.

convert.py (Tripos MOL2 -> MDL SDF):
	mols in: 2	mols out: 2

Total: 2 mols processed.
nothing to compress
bzcat: Can't open input file 44: No such file or directory.
bzcat: Can't open input file 42: No such file or directory.
bzcat: Can't open input file 44: No such file or directory.
bzcat: Can't open input file 44: No such file or directory.
du2.csh script updated
we could not build the ligand for docking!