usefragsph not on There are 28 ligand heavy atoms Ligand center of coords (x y z): 21.0325357142857 7.58657142857143 13.4746071428571 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1109 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 661 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 660 Number of spheres polar: 175, nonpolar: 257, out of current total: 660 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.04611 30.86683 -2.36154 17.54652 3.54288 23.20600 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 272 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 223 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 199 Spheres center of coords (x y z): 19.0026852261306 8.32137783919598 13.825026482412 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.73497516585537 Final number of output spheres is: 45 Number of polar spheres: 10 Number of nonpolar spheres: 27 Number of spheres that are near neither polar nor nonpolar receptor atoms: 8 Final number of spheres that are from crystallographic ligand: 28