usefragsph not on
There are 27 ligand heavy atoms
Ligand center of coords (x y z): 28.6374444444444 5.18474074074074 6.95266666666667
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1284
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 759
WARNING: removing a crystallographic sphere that is distance 0.909524051358732 angstroms from closest receptor atom
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 757
Number of spheres polar: 206, nonpolar: 320, out of current total: 757
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 18.66847 38.60068 -4.78021 15.15545 -2.82002 16.95038
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 454
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 388
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 340
Spheres center of coords (x y z): 27.4511245882353 2.79089158823529 4.20716052941176
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.34092128550234
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 28
Number of spheres that are near neither polar nor nonpolar receptor atoms: 8
Final number of spheres that are from crystallographic ligand: 26