usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): -14.20284 13.86184 40.96216 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1353 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 821 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 821 Number of spheres polar: 241, nonpolar: 378, out of current total: 821 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -24.15792 -4.29027 3.95140 23.80852 31.01508 50.92288 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 276 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 238 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 207 Spheres center of coords (x y z): -11.9706852657005 16.2787629951691 41.9449709661836 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.99308996211716 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 22 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 25