usefragsph not on There are 22 ligand heavy atoms Ligand center of coords (x y z): -17.0564545454545 15.3082272727273 42.444 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1285 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 799 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 799 Number of spheres polar: 242, nonpolar: 339, out of current total: 799 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -27.03266 -7.05686 5.45064 25.22535 32.53025 52.43500 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 483 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 424 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 397 Spheres center of coords (x y z): -15.6915018891688 16.5978910831234 42.9923424937028 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.29204213091272 Final number of output spheres is: 60 Number of polar spheres: 24 Number of nonpolar spheres: 32 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 22