usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 22.1446666666667 10.7094545454545 31.9380606060606 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1865 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 853 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 853 Number of spheres polar: 204, nonpolar: 387, out of current total: 853 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.18800 32.13574 0.74698 20.67252 21.96625 41.33033 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 508 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 435 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 403 Spheres center of coords (x y z): 24.6095669975186 12.7074288337469 30.2208891563276 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.25970461039804 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 33