usefragsph not on There are 35 ligand heavy atoms Ligand center of coords (x y z): 21.7710571428571 10.3921714285714 31.6533142857143 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1798 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 748 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 748 Number of spheres polar: 217, nonpolar: 331, out of current total: 748 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.89375 31.76285 0.45259 20.38280 21.76269 41.06713 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 267 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 219 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 188 Spheres center of coords (x y z): 24.3573171276596 11.0789436702128 29.7931996276596 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.89041450129238 Final number of output spheres is: 45 Number of polar spheres: 12 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 5 Final number of spheres that are from crystallographic ligand: 35