usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 21.4731904761905 24.4195714285714 44.871 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1044 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 674 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 670 Number of spheres polar: 184, nonpolar: 340, out of current total: 670 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.47608 31.38153 14.49790 34.40438 35.05624 54.59500 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 223 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 188 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 165 Spheres center of coords (x y z): 19.7132423636364 25.7679304242424 43.1271667272727 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.99619247557202 Final number of output spheres is: 45 Number of polar spheres: 17 Number of nonpolar spheres: 26 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21