usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 19.9635882352941 28.3374117647059 19.6222941176471 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1352 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 765 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 765 Number of spheres polar: 186, nonpolar: 477, out of current total: 765 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.07889 29.95471 18.34858 38.33606 9.63763 29.14349 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 418 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 359 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 341 Spheres center of coords (x y z): 21.6944397360704 27.5874160703812 20.5852176246334 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.50840770586552 Final number of output spheres is: 60 Number of polar spheres: 20 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 17