usefragsph not on There are 31 ligand heavy atoms Ligand center of coords (x y z): 21.0063548387097 8.21083870967742 32.2698709677419 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1534 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 747 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 746 Number of spheres polar: 181, nonpolar: 372, out of current total: 746 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.55248 30.99885 -1.72262 18.18225 22.30715 41.75185 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 413 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 361 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 313 Spheres center of coords (x y z): 23.1015461022364 9.16250827476038 31.3189022044728 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.13663253919197 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 31