usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 23.1671470588235 8.92094117647059 31.8478529411765 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1859 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 976 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 976 Number of spheres polar: 268, nonpolar: 555, out of current total: 976 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.17947 33.12067 -1.06505 18.91214 21.92405 41.58995 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 484 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 417 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 340 Spheres center of coords (x y z): 23.9142833235294 9.38875838235295 30.9996009117647 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.03825310244969 Final number of output spheres is: 60 Number of polar spheres: 14 Number of nonpolar spheres: 42 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 34