usefragsph not on There are 21 ligand heavy atoms Ligand center of coords (x y z): 20.7710476190476 9.71385714285714 32.7330952380952 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1602 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 974 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 974 Number of spheres polar: 302, nonpolar: 545, out of current total: 974 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 10.81187 30.77015 -0.25994 19.66335 22.81669 41.46337 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 495 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 423 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 357 Spheres center of coords (x y z): 23.1651875630252 11.4572171148459 31.0141894957983 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.40434400833265 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 43 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 21