usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 22.2728695652174 10.0491739130435 31.2929130434783 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1288 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 757 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 756 Number of spheres polar: 181, nonpolar: 420, out of current total: 756 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 13.04266 32.21192 0.07446 20.04312 21.45400 41.09471 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 429 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 377 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 342 Spheres center of coords (x y z): 24.2457572222222 10.9105178654971 30.1843494152047 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.95987198365538 Final number of output spheres is: 60 Number of polar spheres: 6 Number of nonpolar spheres: 45 Number of spheres that are near neither polar nor nonpolar receptor atoms: 9 Final number of spheres that are from crystallographic ligand: 23