usefragsph not on There are 38 ligand heavy atoms Ligand center of coords (x y z): -32.6900526315789 -35.8373421052632 -11.7764210526316 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1655 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 805 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 799 Number of spheres polar: 170, nonpolar: 427, out of current total: 799 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -42.68685 -22.71923 -45.72161 -25.96893 -21.75555 -1.88255 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 441 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 386 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 369 Spheres center of coords (x y z): -32.0172901626016 -35.3986402710027 -13.2896220867209 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.42335639003438 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 46 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 38