usefragsph not on There are 32 ligand heavy atoms Ligand center of coords (x y z): 21.45365625 7.641125 32.02909375 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1524 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 789 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 788 Number of spheres polar: 168, nonpolar: 479, out of current total: 788 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 11.53089 31.43405 -2.32647 17.60113 22.04646 41.47707 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 285 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 232 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 203 Spheres center of coords (x y z): 22.4410293596059 6.87560320197044 32.0481424137931 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.9188340903322 Final number of output spheres is: 45 Number of polar spheres: 13 Number of nonpolar spheres: 30 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 32