usefragsph not on There are 30 ligand heavy atoms Ligand center of coords (x y z): 22.0191 28.6420333333333 21.7463666666667 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1325 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 833 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 828 Number of spheres polar: 194, nonpolar: 467, out of current total: 828 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.02812 32.00229 18.72137 38.62071 11.92658 31.70428 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 433 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 370 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 305 Spheres center of coords (x y z): 23.5725324262295 29.7866644262295 21.8291489180328 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.89667113966314 Final number of output spheres is: 60 Number of polar spheres: 17 Number of nonpolar spheres: 39 Number of spheres that are near neither polar nor nonpolar receptor atoms: 4 Final number of spheres that are from crystallographic ligand: 30