usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): -26.4242972972973 33.6184324324324 12.3074864864865 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1691 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 949 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 949 Number of spheres polar: 298, nonpolar: 498, out of current total: 949 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -36.41618 -16.46013 23.61959 43.59276 2.38338 22.29502 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 278 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 229 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 204 Spheres center of coords (x y z): -24.5477259313726 31.8298584803922 13.8709081372549 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.14574514697005 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 29 Number of spheres that are near neither polar nor nonpolar receptor atoms: 0 Final number of spheres that are from crystallographic ligand: 37