usefragsph not on
There are 29 ligand heavy atoms
Ligand center of coords (x y z): -2.438 -1.0801724137931 21.4608965517241
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 1466
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 804
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 804
Number of spheres polar: 282, nonpolar: 422, out of current total: 804
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.40851 7.35335 -11.08006 8.89904 11.46321 31.45312
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 260
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 203
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 126
Spheres center of coords (x y z): -2.12916746031746 -0.678185476190477 24.2287037301587
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 4.54990116655195
Final number of output spheres is: 45
Number of polar spheres: 11
Number of nonpolar spheres: 30
Number of spheres that are near neither polar nor nonpolar receptor atoms: 4
Final number of spheres that are from crystallographic ligand: 29