usefragsph not on
There are 43 ligand heavy atoms
Ligand center of coords (x y z): 34.2733023255814 34.6936046511628 17.572
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2424
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1103
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1103
Number of spheres polar: 231, nonpolar: 719, out of current total: 1103
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 25.74974 44.18680 24.69753 44.67280 7.58254 27.54200
Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 346
Number of spheres after second pass removing spheres absolutely <0.8 from each other: 286
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 284
Spheres center of coords (x y z): 33.8255049647887 32.2435900352113 17.815456443662
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 6.12996293689403
Final number of output spheres is: 45
Number of polar spheres: 4
Number of nonpolar spheres: 36
Number of spheres that are near neither polar nor nonpolar receptor atoms: 5
Final number of spheres that are from crystallographic ligand: 43