usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 2.27916 12.4658 29.79032 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1472 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 948 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 948 Number of spheres polar: 310, nonpolar: 452, out of current total: 948 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.63705 12.14044 2.49227 22.41396 19.81552 39.76422 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 503 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 413 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 366 Spheres center of coords (x y z): 0.223975027322404 14.3169681967213 30.0205049453552 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.21802174543319 Final number of output spheres is: 60 Number of polar spheres: 19 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 13 Final number of spheres that are from crystallographic ligand: 25