usefragsph not on There are 23 ligand heavy atoms Ligand center of coords (x y z): 2.1784347826087 11.8834782608696 28.7223913043478 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1185 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 879 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 879 Number of spheres polar: 275, nonpolar: 440, out of current total: 879 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -7.69340 12.07785 1.91050 21.86645 18.74893 38.64787 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 493 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 426 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 368 Spheres center of coords (x y z): 0.510482554347826 13.7069233967391 29.8965896467391 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.94114027796024 Final number of output spheres is: 60 Number of polar spheres: 21 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 23