usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 44.8082424242424 32.3246666666667 31.1808181818182 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1542 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 663 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 660 Number of spheres polar: 153, nonpolar: 318, out of current total: 660 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.81549 54.76631 22.32669 42.32277 21.28770 41.14471 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 395 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 349 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 308 Spheres center of coords (x y z): 46.5345737337662 30.6354106818182 30.7905937987013 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.85034232070716 Final number of output spheres is: 60 Number of polar spheres: 13 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 11 Final number of spheres that are from crystallographic ligand: 33