usefragsph not on There are 34 ligand heavy atoms Ligand center of coords (x y z): 44.5069411764706 32.6866764705882 31.7298235294118 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1593 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 666 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 662 Number of spheres polar: 148, nonpolar: 327, out of current total: 662 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 34.58941 54.47836 22.69534 42.58934 21.76460 41.42339 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 386 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 343 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 288 Spheres center of coords (x y z): 46.0973166666667 30.7438063194445 31.8526307291667 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 4.20452705415899 Final number of output spheres is: 60 Number of polar spheres: 7 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 20 Final number of spheres that are from crystallographic ligand: 34