usefragsph not on There are 15 ligand heavy atoms Ligand center of coords (x y z): 19.7325333333333 32.1202 30.1011333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1340 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 822 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 822 Number of spheres polar: 223, nonpolar: 468, out of current total: 822 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 9.75212 29.67991 22.15933 42.11079 20.11573 40.08421 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 270 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 227 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 153 Spheres center of coords (x y z): 22.9861304575163 32.6155896078431 30.0926456862745 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.26996369856437 Final number of output spheres is: 45 Number of polar spheres: 14 Number of nonpolar spheres: 25 Number of spheres that are near neither polar nor nonpolar receptor atoms: 6 Final number of spheres that are from crystallographic ligand: 15