usefragsph not on There are 26 ligand heavy atoms Ligand center of coords (x y z): 7.2115 14.9714615384615 36.6851538461539 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2200 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1059 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1059 Number of spheres polar: 333, nonpolar: 626, out of current total: 1059 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -2.78797 16.90475 5.04200 24.96839 27.15351 46.52246 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 484 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 414 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 367 Spheres center of coords (x y z): 5.57649891008174 16.8632730245232 37.1361698910082 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.28503850418249 Final number of output spheres is: 60 Number of polar spheres: 25 Number of nonpolar spheres: 33 Number of spheres that are near neither polar nor nonpolar receptor atoms: 2 Final number of spheres that are from crystallographic ligand: 26