usefragsph not on
There are 31 ligand heavy atoms
Ligand center of coords (x y z): 4.98903225806452 12.8733225806452 35.4872580645161
Using crystallographic ligand as spheres for output
Starting number of spheres from sph/sph cluster 0: 2006
FINISHED READING IN FILE sph/sph CLUSTER 0 
Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1102
Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1102
Number of spheres polar: 365, nonpolar: 637, out of current total: 1102
Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.96159 14.97544 2.90295 22.87288 25.98396 45.43061
Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 528
Number of spheres after second pass removing spheres absolutely <0.5 from each other: 433
Crystallographic spheres are present, so doing continuity based on crystallographic spheres
After continuity checking, number of spheres is: 376
Spheres center of coords (x y z): 3.71282199468085 15.8201621010638 34.1369894680851
Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8)
Average weighted-distance for final elimination is: 5.94108983469479
Final number of output spheres is: 60
Number of polar spheres: 24
Number of nonpolar spheres: 33
Number of spheres that are near neither polar nor nonpolar receptor atoms: 3
Final number of spheres that are from crystallographic ligand: 31