usefragsph not on There are 17 ligand heavy atoms Ligand center of coords (x y z): 3.88441176470588 11.3489411764706 30.4297647058823 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1526 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 973 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 972 Number of spheres polar: 303, nonpolar: 490, out of current total: 972 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -6.10486 13.79426 1.41333 21.34812 20.45146 40.21538 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 511 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 434 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 415 Spheres center of coords (x y z): 0.832760096385542 12.0393273253012 30.7299355903614 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 7.67085839437397 Final number of output spheres is: 60 Number of polar spheres: 16 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 17