usefragsph not on There are 33 ligand heavy atoms Ligand center of coords (x y z): 5.1930303030303 12.8324242424242 35.5101212121212 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 2106 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1179 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1179 Number of spheres polar: 410, nonpolar: 679, out of current total: 1179 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -4.80353 15.14133 2.84487 22.82800 25.64666 45.43649 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 585 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 508 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 449 Spheres center of coords (x y z): 4.68783062360802 15.1720555233853 35.3548908463252 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.27492634316883 Final number of output spheres is: 60 Number of polar spheres: 22 Number of nonpolar spheres: 37 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 33