usefragsph not on There are 25 ligand heavy atoms Ligand center of coords (x y z): 6.05216 14.55196 35.75376 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1894 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 1150 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 1150 Number of spheres polar: 397, nonpolar: 643, out of current total: 1150 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -3.90391 15.65120 4.56372 24.53434 25.78445 45.75290 Number of spheres after removing spheres too close to each other (approximately <1.5 angstroms): 311 Number of spheres after second pass removing spheres absolutely <0.8 from each other: 247 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 216 Spheres center of coords (x y z): 4.74358282407408 15.7838402314815 34.5106619907408 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.5473944151998 Final number of output spheres is: 45 Number of polar spheres: 16 Number of nonpolar spheres: 28 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 25