usefragsph not on There are 27 ligand heavy atoms Ligand center of coords (x y z): -3.31077777777778 -0.939333333333333 22.6173333333333 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1347 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 765 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 764 Number of spheres polar: 252, nonpolar: 372, out of current total: 764 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: -12.82123 6.68529 -10.92638 9.05770 12.62877 32.57276 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 425 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 355 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 305 Spheres center of coords (x y z): -1.61520760655738 -0.748448786885246 24.7948079016393 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 6.38500218679566 Final number of output spheres is: 60 Number of polar spheres: 23 Number of nonpolar spheres: 36 Number of spheres that are near neither polar nor nonpolar receptor atoms: 1 Final number of spheres that are from crystallographic ligand: 27