usefragsph not on There are 37 ligand heavy atoms Ligand center of coords (x y z): 22.2108108108108 13.130027027027 31.8001351351351 Using crystallographic ligand as spheres for output Starting number of spheres from sph/sph cluster 0: 1538 FINISHED READING IN FILE sph/sph CLUSTER 0 Number of sphere points after cutting off spheres too far from center of ligand (10 angstroms): 977 Number of spheres after removing too far (>7 angstroms) and too close to receptor (<1.2 angstroms): 977 Number of spheres polar: 277, nonpolar: 497, out of current total: 977 Extents of grid to search are X1 X2 Y1 Y2 Z1 Z2: 12.22767 32.19801 3.14767 23.09515 21.85044 41.74197 Number of spheres after removing spheres too close to each other (approximately <1.0 angstroms): 541 Number of spheres after second pass removing spheres absolutely <0.5 from each other: 463 Crystallographic spheres are present, so doing continuity based on crystallographic spheres After continuity checking, number of spheres is: 402 Spheres center of coords (x y z): 23.6868968905473 15.65591460199 32.3681339054726 Crystallographic ligand, so keeping spheres closest to ANY ligand atom, center of ligand (1/8), and center of spheres (1/8) Average weighted-distance for final elimination is: 5.08515824033284 Final number of output spheres is: 60 Number of polar spheres: 15 Number of nonpolar spheres: 38 Number of spheres that are near neither polar nor nonpolar receptor atoms: 7 Final number of spheres that are from crystallographic ligand: 37